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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1410
total RNA-seq
1293
ChIP-seq
501
ATAC-seq
369
single cell RNA-seq
209
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
51
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
209
DNA accessibility
Date released
187
June, 2019
9
November, 2018
8
October, 2019
5
August, 2017
November, 2020
Available data
206
bam
206
bed narrowPeak
206
bigBed narrowPeak
206
bigWig
204
bed broadPeak
204
bigBed broadPeak
202
bed bed3+
12
fastq
Organism
209
Homo sapiens
Biosample type
178
tissue
30
primary cell
cell line
1
in vitro differentiated cells
Organ
80
kidney
36
limb
33
musculature of body
32
brain
30
heart
18
epithelium
18
ureter
11
vasculature
9
blood vessel
8
connective tissue
7
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
209
AMP
Genome assembly (visualization)
204
GRCh38
183
hg19
Lab
209
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
biosample_type!
cell line
month_released!
December, 2017
November, 2020
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
209 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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