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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1414total RNA-seq
  • 1387ChIP-seq
  • 502ATAC-seq
  • 369single cell RNA-seq
  • 210DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 74WGBS
  • 51pCHi-C
  • 30Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2Capture-C
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
Assay category
  • 210DNA accessibility
Date released
  • 187June, 2019
  • 9November, 2018
  • 8October, 2019
  • 5August, 2017
  • 1November, 2020
Available data
  • 207bam
  • 207bed narrowPeak
  • 207bigBed narrowPeak
  • 207bigWig
  • 205bed broadPeak
  • 205bigBed broadPeak
  • 203bed bed3+
  • 12fastq
Organism
  • 210Homo sapiens
Biosample type
  • 178tissue
  • 31primary cell
  • cell line
  • 1in vitro differentiated cells
Organ
  • 80kidney
  • 36limb
  • 33musculature of body
  • 32brain
  • 30heart
  • 18epithelium
  • 18ureter
  • 11vasculature
  • 9blood vessel
  • 9connective tissue
  • 7pancreas
  • 6liver
  • 4artery
  • 4eye
  • 2adipose tissue
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 210AMP
Genome assembly (visualization)
  • 205GRCh38
  • 184hg19
Lab
  • 210AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

210 results

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Clear Filters
DNase-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
primary cell
cardiac fibroblast3
kidney tubule cell3
endothelial cell of umbilical vein2
glomerular visceral epithelial cell2
kidney glomerular epithelial cell2
in vitro differentiated cells
adipocyte1
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