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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1574
ChIP-seq
1330
total RNA-seq
379
ATAC-seq
361
single cell RNA-seq
202
DNase-seq
87
RNA microarray
84
snATAC-seq
73
WGBS
51
pCHi-C
25
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
202
DNA accessibility
Date released
182
June, 2019
9
November, 2018
6
October, 2019
4
August, 2017
1
November, 2020
Available data
199
bam
199
bed narrowPeak
199
bigBed narrowPeak
199
bigWig
196
bed broadPeak
196
bigBed broadPeak
195
bed bed3+
11
fastq
Organism
202
Homo sapiens
Biosample type
173
tissue
27
primary cell
2
cell line
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
blood vessel
8
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
202
AMP
Genome assembly (visualization)
197
GRCh38
177
hg19
Lab
202
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
biosample_type!
in vitro differentiated cells
files.file_type!
xls
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
202 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
skeletal muscle myoblast
2
+ See 15 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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