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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1512
ChIP-seq
1160
total RNA-seq
331
ATAC-seq
182
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
28
snATAC-seq
24
Hi-C
18
DNase-seq
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
DNA accessibility
Date released
June, 2019
9
November, 2018
6
October, 2019
3
August, 2017
Available data
17
bam
17
bed narrowPeak
17
bigBed narrowPeak
17
bigWig
15
bed broadPeak
15
bigBed broadPeak
14
bed bed3+
11
fastq
Organism
18
Homo sapiens
Biosample type
15
tissue
primary cell
2
cell line
1
in vitro differentiated cells
Organ
4
limb
4
liver
4
pancreas
2
artery
2
blood vessel
2
brain
2
connective tissue
2
nerve
2
vasculature
1
adipose tissue
1
epithelium
1
kidney
1
spleen
Project
18
AMP
Genome assembly (visualization)
17
GRCh38
17
hg19
Lab
18
AMP-T2D consortium
biosample_type!
primary cell
month_released!
April, 2019
July, 2018
June, 2019
BIOSAMPLE
ASSAY
18 results
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DNase-seq
tissue
body of pancreas
2
brain
2
liver
2
right lobe of liver
2
tibial artery
2
+ See 4 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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