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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
885
ChIP-seq
477
total RNA-seq
252
ATAC-seq
185
single cell RNA-seq
56
snATAC-seq
48
WGBS
28
pCHi-C
27
DNase-seq
17
Hi-C
9
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
small RNA-seq
1
whole genome sequencing assay
Assay category
27
DNA accessibility
Date released
19
June, 2019
6
October, 2019
2
August, 2017
Available data
25
bam
25
bed narrowPeak
25
bigBed narrowPeak
25
bigWig
23
bed broadPeak
23
bigBed broadPeak
22
bed bed3+
1
fastq
Organism
27
Homo sapiens
Biosample type
tissue
25
primary cell
2
cell line
Organ
19
epithelium
13
kidney
connective tissue
6
vasculature
5
brain
4
blood vessel
3
heart
2
liver
2
vein
1
eye
1
musculature of body
1
pancreas
Project
27
AMP
Genome assembly (visualization)
23
GRCh38
19
hg19
Lab
27
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
biosample_type!
tissue
organ_slims!
connective tissue
ovary
pituitary gland
BIOSAMPLE
ASSAY
27 results
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DNase-seq
primary cell
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
skeletal muscle myoblast
2
+ See 14 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
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