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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
964
ChIP-seq
496
total RNA-seq
271
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
34
DNase-seq
32
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
34
DNA accessibility
Date released
24
June, 2019
6
October, 2019
3
August, 2017
1
November, 2020
Available data
32
bam
32
bed narrowPeak
32
bigBed narrowPeak
32
bigWig
30
bed broadPeak
30
bigBed broadPeak
28
bed bed3+
2
fastq
Organism
34
Homo sapiens
Biosample type
tissue
31
primary cell
2
cell line
1
in vitro differentiated cells
Organ
19
epithelium
13
kidney
7
connective tissue
6
vasculature
5
brain
4
blood vessel
3
heart
2
liver
2
vein
1
eye
1
musculature of body
1
pancreas
Project
34
AMP
Genome assembly (visualization)
30
GRCh38
25
hg19
Lab
34
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
34 results
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DNase-seq
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 18 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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