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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
760
ChIP-seq
311
total RNA-seq
187
single cell RNA-seq
129
ATAC-seq
56
snATAC-seq
48
WGBS
20
pCHi-C
10
RRBS
9
Hi-C
6
MeRIP-seq
5
DNase-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
5
DNA accessibility
Date released
3
October, 2019
2
August, 2017
Available data
31
bam
31
bed narrowPeak
31
bigBed narrowPeak
31
bigWig
29
bed broadPeak
29
bigBed broadPeak
bed bed3+
1
fastq
Organism
5
Homo sapiens
Biosample type
4
primary cell
2
tissue
1
cell line
1
in vitro differentiated cells
Organ
3
epithelium
3
kidney
Project
5
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
5
AMP-T2D consortium
files.file_type!
bed bed3+
month_released!
May, 2020
BIOSAMPLE
ASSAY
5 results
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DNase-seq
primary cell
skeletal muscle myoblast
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
cell line
glomerular visceral epithelial cell
1
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