Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1278
total RNA-seq
1155
ChIP-seq
458
ATAC-seq
367
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
42
pCHi-C
26
Hi-C
22
DNase-seq
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
22
DNA accessibility
Date released
June, 2019
9
November, 2018
8
October, 2019
4
August, 2017
1
November, 2020
Available data
19
bam
19
bed narrowPeak
19
bigBed narrowPeak
19
bigWig
17
bed broadPeak
17
bigBed broadPeak
16
bed bed3+
11
fastq
Organism
22
Homo sapiens
Biosample type
15
tissue
7
primary cell
2
cell line
1
in vitro differentiated cells
Organ
4
blood vessel
4
epithelium
4
limb
4
liver
4
vasculature
3
pancreas
2
artery
2
brain
2
connective tissue
2
kidney
2
nerve
2
vein
1
adipose tissue
1
spleen
Project
22
AMP
Genome assembly (visualization)
19
hg19
17
GRCh38
Lab
22
AMP-T2D consortium
lab.title!
Mark McCarthy, Oxford
month_released!
June, 2019
BIOSAMPLE
ASSAY
22 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
tissue
body of pancreas
2
brain
2
liver
2
right lobe of liver
2
tibial artery
2
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
osteoblast
1
See all biosamples
Download