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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1663
ChIP-seq
1336
total RNA-seq
375
ATAC-seq
285
single cell RNA-seq
187
DNase-seq
86
RNA microarray
84
snATAC-seq
56
pCHi-C
26
WGBS
25
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
187
DNA accessibility
Date released
169
June, 2019
9
November, 2018
5
August, 2017
3
October, 2019
1
November, 2020
Available data
186
bam
186
bed narrowPeak
186
bigBed narrowPeak
186
bigWig
184
bed broadPeak
184
bigBed broadPeak
182
bed bed3+
12
fastq
Organism
187
Homo sapiens
Biosample type
173
tissue
12
primary cell
1
cell line
1
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
epithelium
18
ureter
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
187
AMP
Genome assembly (visualization)
184
GRCh38
169
hg19
Lab
187
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bed bedgraph
csv
organ_slims!
epithelium
vasculature
BIOSAMPLE
ASSAY
187 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 4 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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