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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1106
total RNA-seq
886
ChIP-seq
448
ATAC-seq
234
single cell RNA-seq
87
RNA microarray
57
snATAC-seq
55
WGBS
53
pCHi-C
30
Hi-C
16
RRBS
15
small RNA-seq
10
MeRIP-seq
4
Capture-C
4
DNase-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
4
DNA accessibility
Date released
3
October, 2019
1
August, 2017
Available data
204
bam
204
bed narrowPeak
204
bigBed narrowPeak
204
bigWig
bed broadPeak
201
bigBed broadPeak
199
bed bed3+
fastq
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
cell line
Organ
3
epithelium
3
kidney
liver
Project
4
AMP
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
4
AMP-T2D consortium
files.file_type!
bed broadPeak
fastq
organ_slims!
liver
BIOSAMPLE
ASSAY
4 results
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DNase-seq
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
skeletal muscle myoblast
1
cell line
glomerular visceral epithelial cell
1
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