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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1792
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
6
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
6
DNA accessibility
Date released
3
August, 2017
3
October, 2019
Available data
209
bam
209
bed narrowPeak
209
bigBed narrowPeak
209
bigWig
206
bed broadPeak
bigBed broadPeak
204
bed bed3+
12
fastq
Organism
6
Homo sapiens
Biosample type
3
primary cell
2
tissue
1
cell line
Organ
3
epithelium
3
kidney
1
liver
1
pancreas
Project
6
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
6
AMP-T2D consortium
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
6 results
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DNase-seq
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
skeletal muscle myoblast
1
tissue
islet of Langerhans
1
right lobe of liver
1
cell line
glomerular visceral epithelial cell
1
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