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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1229
total RNA-seq
803
ChIP-seq
424
ATAC-seq
229
single cell RNA-seq
187
DNase-seq
87
RNA microarray
57
snATAC-seq
55
pCHi-C
51
WGBS
28
Hi-C
18
small RNA-seq
14
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
187
DNA accessibility
Date released
180
June, 2019
6
October, 2019
August, 2017
1
November, 2020
Available data
194
bam
194
bed narrowPeak
194
bigBed narrowPeak
194
bigWig
193
bed bed3+
193
bed broadPeak
193
bigBed broadPeak
fastq
Organism
187
Homo sapiens
Biosample type
162
tissue
23
primary cell
2
cell line
Organ
81
kidney
36
limb
33
musculature of body
30
brain
30
heart
19
epithelium
18
ureter
vasculature
9
blood vessel
7
connective tissue
5
pancreas
4
artery
4
eye
2
liver
2
nerve
2
vein
1
adipose tissue
Project
187
AMP
Genome assembly (visualization)
185
GRCh38
163
hg19
Lab
187
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
fastq
month_released!
August, 2017
organ_slims!
vasculature
BIOSAMPLE
ASSAY
187 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 33 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
astrocyte of the cerebellum
1
+ See 12 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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