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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1230
total RNA-seq
962
ChIP-seq
395
ATAC-seq
171
single cell RNA-seq
119
DNase-seq
85
RNA microarray
58
WGBS
54
pCHi-C
35
snATAC-seq
32
Hi-C
17
small RNA-seq
13
RRBS
10
MeRIP-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
119
DNA accessibility
Date released
109
June, 2019
7
October, 2019
2
August, 2017
1
November, 2020
Available data
130
bam
130
bed narrowPeak
130
bigBed narrowPeak
130
bigWig
128
bed broadPeak
128
bigBed broadPeak
126
bed bed3+
fastq
Organism
119
Homo sapiens
Biosample type
100
tissue
18
primary cell
1
cell line
Organ
kidney
36
limb
33
musculature of body
30
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
7
connective tissue
5
pancreas
4
artery
4
eye
3
liver
2
nerve
2
vein
1
adipose tissue
Project
119
AMP
Genome assembly (visualization)
117
GRCh38
102
hg19
Lab
119
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
fastq
month_released!
January, 2021
organ_slims!
kidney
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
119 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
muscle of leg
13
brain
12
heart left ventricle
3
+ See 28 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
+ See 10 more…
cell line
Panc1
1
See all biosamples
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