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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1290total RNA-seq
  • 1014ChIP-seq
  • 470ATAC-seq
  • 235single cell RNA-seq
  • 200DNase-seq
  • 87RNA microarray
  • 58WGBS
  • 57snATAC-seq
  • 56pCHi-C
  • 33Hi-C
  • 18small RNA-seq
  • 17RRBS
  • 10MeRIP-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 200DNA accessibility
Date released
  • 187June, 2019
  • 10October, 2019
  • 2August, 2017
  • 1November, 2020
Available data
  • 209bam
  • 209bed narrowPeak
  • 209bigBed narrowPeak
  • 209bigWig
  • 206bed broadPeak
  • 206bigBed broadPeak
  • 204bed bed3+
  • fastq
Organism
  • 200Homo sapiens
Biosample type
  • 168tissue
  • 30primary cell
  • 2cell line
Organ
  • 81kidney
  • 36limb
  • 33musculature of body
  • 30brain
  • 30heart
  • 19epithelium
  • 18ureter
  • 11vasculature
  • 9blood vessel
  • 7connective tissue
  • 5pancreas
  • 4artery
  • 4eye
  • 3liver
  • 2nerve
  • 2vein
  • 1adipose tissue
Project
  • 200AMP
Genome assembly (visualization)
  • 196GRCh38
  • 174hg19
Lab
  • 200AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

200 results

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Clear Filters
DNase-seq
tissue
heart18
muscle of arm17
kidney13
muscle of leg13
brain12
primary cell
cardiac fibroblast3
kidney tubule cell3
endothelial cell of umbilical vein2
glomerular visceral epithelial cell2
kidney glomerular epithelial cell2
cell line
Panc11
glomerular visceral epithelial cell1
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