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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1735ChIP-seq
  • 1527total RNA-seq
  • 529ATAC-seq
  • 332single cell RNA-seq
  • 210DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 69WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 210DNA accessibility
Date released
  • 187June, 2019
  • 10October, 2019
  • 7November, 2018
  • 5August, 2017
  • 1November, 2020
Available data
  • 207bam
  • 207bed narrowPeak
  • 207bigBed narrowPeak
  • 207bigWig
  • 204bed broadPeak
  • 204bigBed broadPeak
  • 202bed bed3+
  • 10fastq
Organism
  • 210Homo sapiens
Biosample type
  • 176tissue
  • 31primary cell
  • 2cell line
  • 1in vitro differentiated cells
Organ
  • 81kidney
  • 36limb
  • 33musculature of body
  • 31brain
  • 30heart
  • 19epithelium
  • 18ureter
  • 11vasculature
  • 9blood vessel
  • 9connective tissue
  • 8pancreas
  • 5liver
  • 4artery
  • 4eye
  • 2adipose tissue
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 210AMP
Genome assembly (visualization)
  • 205GRCh38
  • 184hg19
Lab
  • 210AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

210 results

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Clear Filters
DNase-seq
tissue
heart18
muscle of arm17
brain13
kidney13
muscle of leg13
primary cell
cardiac fibroblast3
kidney tubule cell3
endothelial cell of umbilical vein2
glomerular visceral epithelial cell2
kidney glomerular epithelial cell2
cell line
Panc11
glomerular visceral epithelial cell1
in vitro differentiated cells
adipocyte1
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