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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1794ChIP-seq
  • 1505total RNA-seq
  • 508ATAC-seq
  • 346single cell RNA-seq
  • 206DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 56pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 206DNA accessibility
Date released
  • 187June, 2019
  • 10October, 2019
  • 5August, 2017
  • 3November, 2018
  • 1November, 2020
Available data
  • 203bam
  • 203bed narrowPeak
  • 203bigBed narrowPeak
  • 203bigWig
  • 200bed broadPeak
  • 200bigBed broadPeak
  • 198bed bed3+
  • 6fastq
Organism
  • 206Homo sapiens
Biosample type
  • 172tissue
  • 31primary cell
  • 2cell line
  • 1in vitro differentiated cells
Organ
  • 81kidney
  • 36limb
  • 33musculature of body
  • 32brain
  • 30heart
  • 19epithelium
  • 18ureter
  • 11vasculature
  • 9blood vessel
  • 8connective tissue
  • 6pancreas
  • 4artery
  • 4eye
  • 4liver
  • 2nerve
  • 2vein
  • 1adipose tissue
Project
  • 206AMP
Genome assembly (visualization)
  • 201GRCh38
  • 180hg19
Lab
  • 206AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
files.platform.term_name!
  • Illumina HiSeq 4000
BIOSAMPLE
ASSAY

206 results

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Clear Filters
DNase-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
primary cell
cardiac fibroblast3
kidney tubule cell3
endothelial cell of umbilical vein2
glomerular visceral epithelial cell2
kidney glomerular epithelial cell2
cell line
Panc11
glomerular visceral epithelial cell1
in vitro differentiated cells
adipocyte1
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