Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1871ChIP-seq
  • 1525total RNA-seq
  • 513ATAC-seq
  • 333single cell RNA-seq
  • 208DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 208DNA accessibility
Date released
  • 187June, 2019
  • 10October, 2019
  • 5August, 2017
  • 5November, 2018
  • 1November, 2020
Available data
  • 205bam
  • 205bed narrowPeak
  • 205bigBed narrowPeak
  • 205bigWig
  • 202bed broadPeak
  • 202bigBed broadPeak
  • 200bed bed3+
  • 8fastq
Organism
  • 208Homo sapiens
Biosample type
  • 174tissue
  • 31primary cell
  • 2cell line
  • 1in vitro differentiated cells
Organ
  • 81kidney
  • 36limb
  • 33musculature of body
  • 31brain
  • 30heart
  • 19epithelium
  • 18ureter
  • 11vasculature
  • 9blood vessel
  • 8connective tissue
  • 7pancreas
  • 6liver
  • 4artery
  • 4eye
  • 2nerve
  • 2vein
  • 1adipose tissue
Project
  • 208AMP
Genome assembly (visualization)
  • 203GRCh38
  • 182hg19
Lab
  • 208AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
files.platform.term_name!
  • Illumina NextSeq 500
BIOSAMPLE
ASSAY

208 results

search-icontable-tab-icon
Clear Filters
DNase-seq
tissue
heart18
muscle of arm17
brain13
kidney13
muscle of leg13
primary cell
cardiac fibroblast3
kidney tubule cell3
endothelial cell of umbilical vein2
glomerular visceral epithelial cell2
kidney glomerular epithelial cell2
cell line
Panc11
glomerular visceral epithelial cell1
in vitro differentiated cells
adipocyte1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego