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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1861ChIP-seq
  • 1328total RNA-seq
  • 531ATAC-seq
  • 369single cell RNA-seq
  • 211DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 57pCHi-C
  • 34Hi-C
  • 33WGBS
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 211DNA accessibility
Date released
  • 187June, 2019
  • 10October, 2019
  • 9November, 2018
  • 4August, 2017
  • 1November, 2020
Available data
  • 208bam
  • 208bed narrowPeak
  • 208bigBed narrowPeak
  • 208bigWig
  • 205bed broadPeak
  • 205bigBed broadPeak
  • 204bed bed3+
  • 11fastq
Organism
  • 211Homo sapiens
Biosample type
  • 178tissue
  • 30primary cell
  • 2cell line
  • 1in vitro differentiated cells
Organ
  • 81kidney
  • 36limb
  • 33musculature of body
  • 32brain
  • 30heart
  • 19epithelium
  • 18ureter
  • 11vasculature
  • 9blood vessel
  • 9connective tissue
  • 8pancreas
  • 6liver
  • 4artery
  • 4eye
  • 2adipose tissue
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 211AMP
Genome assembly (visualization)
  • 207GRCh38
  • 185hg19
Lab
  • 211AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
files.read_length!
  • 101
BIOSAMPLE
ASSAY

211 results

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Clear Filters
DNase-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
primary cell
cardiac fibroblast3
kidney tubule cell3
endothelial cell of umbilical vein2
glomerular visceral epithelial cell2
kidney glomerular epithelial cell2
cell line
Panc11
glomerular visceral epithelial cell1
in vitro differentiated cells
adipocyte1
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