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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1688
ChIP-seq
1276
total RNA-seq
385
ATAC-seq
314
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
73
WGBS
55
pCHi-C
29
Hi-C
21
DNase-seq
20
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA accessibility
Date released
June, 2019
9
November, 2018
6
October, 2019
5
August, 2017
1
November, 2020
Available data
18
bam
18
bed narrowPeak
18
bigBed narrowPeak
18
bigWig
15
bed broadPeak
15
bigBed broadPeak
13
bed bed3+
12
fastq
Organism
21
Homo sapiens
Biosample type
13
tissue
5
primary cell
2
cell line
1
in vitro differentiated cells
Organ
5
epithelium
4
blood vessel
4
limb
4
liver
4
pancreas
vasculature
3
connective tissue
3
kidney
2
artery
2
brain
2
nerve
2
vein
1
adipose tissue
1
spleen
Project
21
AMP
Genome assembly (visualization)
18
hg19
16
GRCh38
Lab
21
AMP-T2D consortium
month_released!
April, 2018
June, 2019
May, 2020
organ_slims!
vasculature
BIOSAMPLE
ASSAY
21 results
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DNase-seq
tissue
body of pancreas
2
brain
2
liver
2
right lobe of liver
2
tibial nerve
2
+ See 3 more…
primary cell
skeletal muscle myoblast
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
osteoblast
1
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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