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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1388
total RNA-seq
1306
ChIP-seq
477
ATAC-seq
369
single cell RNA-seq
193
DNase-seq
87
RNA microarray
84
snATAC-seq
66
WGBS
53
pCHi-C
29
Hi-C
18
small RNA-seq
14
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
193
DNA accessibility
Date released
183
June, 2019
October, 2019
9
November, 2018
August, 2017
1
November, 2020
Available data
193
bam
193
bed bed3+
193
bed broadPeak
193
bed narrowPeak
193
bigBed broadPeak
193
bigBed narrowPeak
193
bigWig
9
fastq
Organism
193
Homo sapiens
Biosample type
169
tissue
24
primary cell
Organ
78
kidney
33
musculature of body
32
brain
32
limb
30
heart
18
ureter
14
epithelium
8
connective tissue
7
vasculature
6
pancreas
5
blood vessel
5
liver
eye
2
adipose tissue
2
artery
1
spleen
Project
193
AMP
Genome assembly (visualization)
193
GRCh38
170
hg19
Lab
193
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
month_released!
August, 2017
February, 2018
October, 2019
organ_slims!
eye
BIOSAMPLE
ASSAY
193 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
primary cell
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 15 more…
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