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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1522
ChIP-seq
964
total RNA-seq
502
ATAC-seq
365
single cell RNA-seq
197
DNase-seq
86
RNA microarray
83
snATAC-seq
66
WGBS
52
pCHi-C
31
Hi-C
15
small RNA-seq
14
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
DNAme array
1
whole genome sequencing assay
Assay category
197
DNA accessibility
Date released
181
June, 2019
8
November, 2018
8
October, 2019
August, 2017
Available data
195
bam
195
bed narrowPeak
195
bigBed narrowPeak
195
bigWig
194
bed bed3+
194
bed broadPeak
194
bigBed broadPeak
8
fastq
Organism
197
Homo sapiens
Biosample type
174
tissue
21
primary cell
2
cell line
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
connective tissue
7
pancreas
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
vein
1
spleen
Project
197
AMP
Genome assembly (visualization)
195
GRCh38
173
hg19
Lab
197
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
August, 2017
organ_slims!
connective tissue
vein
BIOSAMPLE
ASSAY
197 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
primary cell
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 12 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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