Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1698
ChIP-seq
1460
total RNA-seq
478
ATAC-seq
363
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
72
WGBS
56
pCHi-C
25
Hi-C
21
RRBS
19
DNase-seq
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
19
DNA accessibility
Date released
June, 2019
9
November, 2018
5
August, 2017
4
October, 2019
1
November, 2020
Available data
16
bam
16
bed narrowPeak
16
bigBed narrowPeak
16
bigWig
13
bed broadPeak
13
bigBed broadPeak
12
fastq
11
bed bed3+
Organism
19
Homo sapiens
Biosample type
11
tissue
5
primary cell
2
cell line
1
in vitro differentiated cells
Organ
5
epithelium
blood vessel
limb
4
liver
4
pancreas
4
vasculature
3
connective tissue
3
kidney
2
artery
2
brain
2
nerve
2
vein
1
adipose tissue
1
spleen
Project
19
AMP
Genome assembly (visualization)
16
hg19
14
GRCh38
Lab
19
AMP-T2D consortium
month_released!
June, 2019
organ_slims!
blood vessel
limb
BIOSAMPLE
ASSAY
19 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
tissue
body of pancreas
2
brain
2
liver
2
right lobe of liver
2
islet of Langerhans
1
+ See 2 more…
primary cell
skeletal muscle myoblast
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
osteoblast
1
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download