Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1653ChIP-seq
  • 1130total RNA-seq
  • 379ATAC-seq
  • 289single cell RNA-seq
  • 204DNase-seq
  • 87RNA microarray
  • 74snATAC-seq
  • 56pCHi-C
  • 25Hi-C
  • 24WGBS
  • 19RRBS
  • 16small RNA-seq
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 204DNA accessibility
Date released
  • 183June, 2019
  • 9October, 2019
  • 7November, 2018
  • 4August, 2017
  • 1November, 2020
Available data
  • 201bam
  • 201bed narrowPeak
  • 201bigBed narrowPeak
  • 201bigWig
  • 199bed broadPeak
  • 199bigBed broadPeak
  • 197bed bed3+
  • 9fastq
Organism
  • 204Homo sapiens
Biosample type
  • 171tissue
  • 31primary cell
  • 1cell line
  • 1in vitro differentiated cells
Organ
  • 81kidney
  • 36limb
  • 33musculature of body
  • 32brain
  • 30heart
  • 19epithelium
  • 18ureter
  • 11vasculature
  • 9blood vessel
  • 9connective tissue
  • pancreas
  • 6liver
  • 4artery
  • 4eye
  • 2adipose tissue
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 204AMP
Genome assembly (visualization)
  • 199GRCh38
  • 180hg19
Lab
  • 204AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

204 results

search-icontable-tab-icon
Clear Filters
DNase-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney9
left renal cortex interstitium4
left renal pelvis4
right renal pelvis4
heart left ventricle3
retina3
right renal cortex interstitium3
coronary artery2
frontal cortex2
liver2
omental fat pad2
right atrium auricular region2
right lobe of liver2
tibial artery2
tibial nerve2
Ammon's horn1
ascending aorta1
caudate nucleus1
cerebellar cortex1
cerebellum (Hemisphere)1
forelimb muscle1
globus pallidus1
heart right ventricle1
hindlimb muscle1
inferior parietal cortex1
left cardiac atrium1
medulla oblongata1
midbrain1
middle frontal gyrus1
occipital lobe1
pons1
putamen1
spleen1
superior temporal gyrus1
primary cell
cardiac fibroblast3
kidney tubule cell3
endothelial cell of umbilical vein2
glomerular visceral epithelial cell2
kidney glomerular epithelial cell2
skeletal muscle myoblast2
astrocyte of the cerebellum1
astrocyte of the hippocampus1
brain microvascular endothelial cell1
brain pericyte1
cardiac muscle cell1
choroid plexus epithelial cell1
epithelial cell of proximal tubule1
glomerular endothelial cell1
hepatic stellate cell1
hepatocyte1
kidney capillary endothelial cell1
kidney epithelial cell1
osteoblast1
renal cortical epithelial cell1
retinal pigment epithelial cell1
skeletal muscle cell1
smooth muscle cell of the brain vasculature1
cell line
glomerular visceral epithelial cell1
in vitro differentiated cells
adipocyte1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego