Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474total RNA-seq
  • 153ChIP-seq
  • 25ATAC-seq
  • 9DNase-seq
  • 6WGBS
  • 5pCHi-C
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 2Capture-C
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 9DNA accessibility
Date released
  • 6June, 2019
  • 1August, 2017
  • 1November, 2018
  • 1November, 2020
Available data
  • 9bam
  • 9bed broadPeak
  • 9bed narrowPeak
  • 9bigBed broadPeak
  • 9bigBed narrowPeak
  • 9bigWig
  • 8bed bed3+
  • 2fastq
Organism
  • 9Homo sapiens
Biosample type
  • 6primary cell
  • 2tissue
  • 1in vitro differentiated cells
Organ
  • 81kidney
  • 36limb
  • 33musculature of body
  • 32brain
  • 30heart
  • 19epithelium
  • 18ureter
  • 11vasculature
  • 9blood vessel
  • 9connective tissue
  • 8pancreas
  • 6liver
  • 4artery
  • 4eye
  • 2adipose tissue
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 9AMP
Genome assembly (visualization)
  • 9GRCh38
  • 8hg19
Lab
  • 9AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

9 results

search-icontable-tab-icon
Clear Filters
DNase-seq
primary cell
cardiac fibroblast3
brain pericyte1
hepatic stellate cell1
osteoblast1
tissue
omental fat pad2
in vitro differentiated cells
adipocyte1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego