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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1476total RNA-seq
  • 1297ChIP-seq
  • 441ATAC-seq
  • 363single cell RNA-seq
  • 190DNase-seq
  • 87RNA microarray
  • 77snATAC-seq
  • 67WGBS
  • 36pCHi-C
  • 24Hi-C
  • 18small RNA-seq
  • 5GRO-seq
  • 4Capture-C
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 190DNA accessibility
Date released
  • 171June, 2019
  • 9November, 2018
  • 7October, 2019
  • 2August, 2017
  • 1November, 2020
Available data
  • 187bam
  • 187bed narrowPeak
  • 187bigBed narrowPeak
  • 187bigWig
  • 186bed bed3+
  • 186bed broadPeak
  • 186bigBed broadPeak
  • 10fastq
Organism
  • 190Homo sapiens
Biosample type
  • 177tissue
  • 13primary cell
Organ
  • 74kidney
  • 36limb
  • 33musculature of body
  • 28heart
  • 27brain
  • 18ureter
  • 8epithelium
  • 7blood vessel
  • 7pancreas
  • 7vasculature
  • 6connective tissue
  • 6liver
  • 4artery
  • 3eye
  • 2adipose tissue
  • 2nerve
  • 1spleen
  • 1vein
Project
  • 190AMP
Genome assembly (visualization)
  • 187GRCh38
  • 167hg19
Lab
  • 190AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

190 results

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Clear Filters
DNase-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
primary cell
kidney tubule cell3
kidney glomerular epithelial cell2
brain pericyte1
cardiac fibroblast1
endothelial cell of umbilical vein1
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