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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1476
total RNA-seq
1297
ChIP-seq
441
ATAC-seq
363
single cell RNA-seq
190
DNase-seq
87
RNA microarray
77
snATAC-seq
67
WGBS
36
pCHi-C
24
Hi-C
18
small RNA-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
190
DNA accessibility
Date released
171
June, 2019
9
November, 2018
7
October, 2019
2
August, 2017
1
November, 2020
Available data
187
bam
187
bed narrowPeak
187
bigBed narrowPeak
187
bigWig
186
bed bed3+
186
bed broadPeak
186
bigBed broadPeak
10
fastq
Organism
190
Homo sapiens
Biosample type
177
tissue
13
primary cell
Organ
74
kidney
36
limb
33
musculature of body
28
heart
27
brain
18
ureter
8
epithelium
7
blood vessel
7
pancreas
7
vasculature
6
connective tissue
6
liver
4
artery
3
eye
2
adipose tissue
2
nerve
1
spleen
1
vein
Project
190
AMP
Genome assembly (visualization)
187
GRCh38
167
hg19
Lab
190
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
replication_type!
isogenic
BIOSAMPLE
ASSAY
190 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
primary cell
kidney tubule cell
3
kidney glomerular epithelial cell
2
brain pericyte
1
cardiac fibroblast
1
endothelial cell of umbilical vein
1
+ See 5 more…
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