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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1286
total RNA-seq
1116
ChIP-seq
336
ATAC-seq
274
single cell RNA-seq
163
DNase-seq
87
RNA microarray
72
snATAC-seq
67
WGBS
15
Hi-C
8
pCHi-C
7
small RNA-seq
5
GRO-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
FAIRE-seq
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
snDrop-seq
1
whole genome sequencing assay
Assay category
163
DNA accessibility
Date released
148
June, 2019
8
November, 2018
5
October, 2019
1
August, 2017
1
November, 2020
Available data
162
bam
162
bed bed3+
162
bed broadPeak
162
bed narrowPeak
162
bigBed broadPeak
162
bigBed narrowPeak
162
bigWig
8
fastq
Organism
163
Homo sapiens
Biosample type
155
tissue
8
primary cell
Organ
67
kidney
36
limb
33
musculature of body
21
heart
18
brain
18
ureter
7
blood vessel
7
vasculature
6
pancreas
5
connective tissue
5
liver
4
artery
4
epithelium
2
adipose tissue
2
nerve
1
eye
1
spleen
1
vein
Project
163
AMP
Genome assembly (visualization)
162
GRCh38
152
hg19
Lab
163
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
163 results
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DNase-seq
tissue
muscle of arm
17
heart
14
muscle of leg
13
brain
12
kidney
11
+ See 31 more…
primary cell
brain pericyte
1
endothelial cell of umbilical vein
1
hepatic stellate cell
1
hepatocyte
1
kidney capillary endothelial cell
1
+ See 3 more…
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