Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1286total RNA-seq
  • 1116ChIP-seq
  • 336ATAC-seq
  • 274single cell RNA-seq
  • 163DNase-seq
  • 87RNA microarray
  • 72snATAC-seq
  • 67WGBS
  • 15Hi-C
  • 8pCHi-C
  • 7small RNA-seq
  • 5GRO-seq
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1FAIRE-seq
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 163DNA accessibility
Date released
  • 148June, 2019
  • 8November, 2018
  • 5October, 2019
  • 1August, 2017
  • 1November, 2020
Available data
  • 162bam
  • 162bed bed3+
  • 162bed broadPeak
  • 162bed narrowPeak
  • 162bigBed broadPeak
  • 162bigBed narrowPeak
  • 162bigWig
  • 8fastq
Organism
  • 163Homo sapiens
Biosample type
  • 155tissue
  • 8primary cell
Organ
  • 67kidney
  • 36limb
  • 33musculature of body
  • 21heart
  • 18brain
  • 18ureter
  • 7blood vessel
  • 7vasculature
  • 6pancreas
  • 5connective tissue
  • 5liver
  • 4artery
  • 4epithelium
  • 2adipose tissue
  • 2nerve
  • 1eye
  • 1spleen
  • 1vein
Project
  • 163AMP
Genome assembly (visualization)
  • 162GRCh38
  • 152hg19
Lab
  • 163AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

163 results

search-icontable-tab-icon
Clear Filters
DNase-seq
tissue
muscle of arm17
heart14
muscle of leg13
brain12
kidney11
primary cell
brain pericyte1
endothelial cell of umbilical vein1
hepatic stellate cell1
hepatocyte1
kidney capillary endothelial cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego