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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1867
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
56
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
5
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
2
July, 2019
1
August, 2017
1
November, 2018
1
October, 2019
Available data
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
2
fastq
1
tar
Organism
15
Homo sapiens
Biosample type
8
tissue
6
cell line
1
primary cell
Organ
12
pancreas
7
epithelium
1
blood vessel
1
brain
1
kidney
1
vasculature
1
vein
Project
15
AMP
Genome assembly (visualization)
5
hg19
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
5
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_title!
snDrop-seq
organ_slims!
ovary
BIOSAMPLE
ASSAY
15 results
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MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
4
1
frontal cortex
1
kidney
1
pancreas
1
cell line
EndoC_BH1
6
primary cell
endothelial cell of umbilical vein
1
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