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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1405
total RNA-seq
1294
ChIP-seq
464
ATAC-seq
363
single cell RNA-seq
201
DNase-seq
87
RNA microarray
84
snATAC-seq
72
WGBS
50
pCHi-C
25
Hi-C
21
RRBS
18
small RNA-seq
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
72
DNA methylation
4
DNA accessibility
Target of assay
2
control
2
nucleotide modification
Date released
41
May, 2022
12
July, 2019
10
August, 2017
7
November, 2018
6
February, 2021
4
November, 2020
Available data
41
zippedFastqFolder
19
bam
19
bigWig
18
fastq
15
bed bedMethyl
15
bigBed bedMethyl
6
tsv
4
bed narrowPeak
4
bigBed narrowPeak
Organism
80
Homo sapiens
Biosample type
47
primary cell
33
tissue
cell line
Organ
57
pancreas
48
epithelium
8
heart
6
adipose tissue
6
connective tissue
4
liver
blood vessel
3
vasculature
2
spleen
1
brain
1
kidney
1
limb
1
musculature of body
1
vein
Project
47
HPAP
33
AMP
Genome assembly (visualization)
15
GRCh38
4
hg19
Lab
47
Klaus Kaestner, Upenn
29
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
biosample_type!
cell line
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
80 results
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WGBS
FAIRE-seq
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
islet of Langerhans
1
4
heart left ventricle
4
adipose tissue
3
liver
3
pancreas
2
1
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