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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1828
ChIP-seq
1453
total RNA-seq
455
ATAC-seq
256
single cell RNA-seq
212
DNase-seq
84
RNA microarray
75
WGBS
57
pCHi-C
49
snATAC-seq
27
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
18
Transcription
5
DNA accessibility
Date released
84
February, 2021
20
July, 2019
1
August, 2017
August, 2021
1
November, 2018
1
October, 2019
Available data
84
txt
23
bam
23
bigWig
18
tsv
5
bed narrowPeak
5
bigBed narrowPeak
2
fastq
1
tar
Organism
107
Homo sapiens
Biosample type
104
tissue
3
primary cell
Organ
84
bone element
5
brain
4
pancreas
3
adipose tissue
3
connective tissue
3
liver
2
kidney
2
musculature of body
1
blood vessel
1
epithelium
1
heart
1
vasculature
1
vein
Project
107
AMP
Genome assembly (visualization)
23
hg19
18
GRCh38
Lab
107
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
audit script error
audit.ERROR.category!
audit script error
month_released!
August, 2021
BIOSAMPLE
ASSAY
107 results
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RNA microarray
small RNA-seq
FAIRE-seq
tissue
bone element
84
body of pancreas
2
frontal cortex
1
1
right lobe of liver
2
cerebellum (Hemisphere)
1
+ See 13 more…
primary cell
endothelial cell of umbilical vein
1
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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