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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1524
ChIP-seq
1369
total RNA-seq
400
ATAC-seq
299
single cell RNA-seq
188
DNase-seq
86
RNA microarray
84
snATAC-seq
53
pCHi-C
28
WGBS
22
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
4
DNA accessibility
Date released
84
February, 2021
2
July, 2019
1
August, 2017
1
August, 2021
1
December, 2019
1
November, 2018
Available data
84
txt
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
2
fastq
1
tsv
Organism
89
Homo sapiens
Biosample type
90
tissue
Organ
84
bone element
3
kidney
2
pancreas
1
adipose tissue
1
brain
1
connective tissue
epithelium
Project
90
AMP
Genome assembly (visualization)
4
hg19
Lab
90
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
1
audit script error
files.file_type!
bed bedgraph
month_released!
October, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
90 results
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RNA microarray
FAIRE-seq
tissue
bone element
84
frontal cortex
1
islet of Langerhans
1
kidney
1
kidney interstitium
1
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