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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1738
ChIP-seq
1395
total RNA-seq
489
ATAC-seq
360
single cell RNA-seq
208
DNase-seq
84
snATAC-seq
75
WGBS
48
pCHi-C
29
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
19
DNA methylation
5
DNA accessibility
Date released
15
July, 2019
7
August, 2017
1
November, 2018
1
October, 2019
Available data
17
bed bedMethyl
17
bigBed bedMethyl
6
fastq
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
1
tar
Organism
24
Homo sapiens
Biosample type
15
tissue
9
primary cell
Organ
6
epithelium
5
musculature of body
4
kidney
4
pancreas
3
brain
2
liver
2
vasculature
1
blood vessel
1
eye
1
heart
1
pericardium
1
vein
Project
24
AMP
Genome assembly (visualization)
22
hg19
Lab
24
AMP-T2D consortium
Audit category:
inconsistent ontology term
assay_title!
MeRIP-seq
audit.ERROR.category!
inconsistent ontology term
month_released!
October, 2018
BIOSAMPLE
ASSAY
24 results
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RRBS
FAIRE-seq
tissue
skeletal muscle tissue
4
islet of Langerhans
1
1
kidney
1
1
pancreas
1
1
brain
1
+ See 4 more…
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
hepatocyte
1
kidney epithelial cell
1
+ See 4 more…
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