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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA methylation
5
DNA accessibility
Date released
17
July, 2019
7
August, 2017
5
August, 2021
1
November, 2018
1
October, 2019
Available data
19
bed bedMethyl
19
bigBed bedMethyl
6
fastq
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
1
tar
Organism
31
Homo sapiens
Biosample type
15
tissue
11
primary cell
5
cell line
Organ
7
epithelium
7
kidney
5
musculature of body
4
liver
4
pancreas
3
brain
2
heart
2
vasculature
1
blood vessel
1
connective tissue
1
eye
1
pericardium
1
vein
Project
31
AMP
Genome assembly (visualization)
24
hg19
Lab
26
AMP-T2D consortium
5
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assay_title!
DNase-seq
snDrop-seq
BIOSAMPLE
ASSAY
31 results
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RRBS
FAIRE-seq
STARR-seq
tissue
skeletal muscle tissue
4
islet of Langerhans
1
1
kidney
1
1
pancreas
1
1
brain
1
+ See 4 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
+ See 6 more…
cell line
HEK293T
2
HepG2
2
Synthesized DNA
1
See all biosamples
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