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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1597
ChIP-seq
1510
total RNA-seq
527
ATAC-seq
357
single cell RNA-seq
180
DNase-seq
87
RNA microarray
75
WGBS
74
snATAC-seq
55
pCHi-C
31
Hi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
19
DNA methylation
4
DNA accessibility
Date released
14
July, 2019
7
August, 2017
1
November, 2018
1
October, 2019
Available data
17
bed bedMethyl
17
bigBed bedMethyl
6
fastq
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
1
tar
Organism
23
Homo sapiens
Biosample type
13
tissue
10
primary cell
Organ
7
epithelium
5
kidney
5
musculature of body
4
pancreas
brain
2
heart
2
liver
2
vasculature
1
blood vessel
1
connective tissue
1
eye
1
pericardium
1
vein
Project
23
AMP
Genome assembly (visualization)
21
hg19
Lab
23
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
award.project!
LungMap
organ_slims!
brain
BIOSAMPLE
ASSAY
23 results
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RRBS
FAIRE-seq
tissue
skeletal muscle tissue
4
islet of Langerhans
1
1
kidney
1
1
pancreas
1
1
heart left ventricle
1
+ See 2 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
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