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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1818
ChIP-seq
1467
total RNA-seq
456
ATAC-seq
305
single cell RNA-seq
131
DNase-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
55
pCHi-C
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
DNA methylation
4
DNA accessibility
Date released
12
July, 2019
7
August, 2017
1
November, 2018
1
October, 2019
Available data
15
bed bedMethyl
15
bigBed bedMethyl
6
fastq
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
1
tar
Organism
21
Homo sapiens
Biosample type
13
tissue
8
primary cell
Organ
7
epithelium
kidney
5
musculature of body
4
pancreas
3
brain
2
heart
2
liver
2
vasculature
1
blood vessel
1
connective tissue
1
eye
1
pericardium
1
vein
Project
21
AMP
Genome assembly (visualization)
19
hg19
Lab
21
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
tagAlign bed3+
files.file_type!!
tagAlign bed3+
organ_slims!
kidney
BIOSAMPLE
ASSAY
21 results
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RRBS
FAIRE-seq
tissue
skeletal muscle tissue
4
islet of Langerhans
1
1
pancreas
1
1
brain
1
frontal cortex
1
+ See 3 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
hepatocyte
1
+ See 3 more…
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