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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
219
total RNA-seq
96
ATAC-seq
71
ChIP-seq
41
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
5
DNase-seq
5
single cell RNA-seq
2
Capture-C
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
0
FAIRE-seq
Assay category
5
Transcription
Date released
5
April, 2018
Available data
82
bam
82
bigWig
80
tsv
fastq
2
bed narrowPeak
2
bigBed narrowPeak
Organism
5
Homo sapiens
Biosample type
5
primary cell
Organ
93
heart
65
kidney
9
lung
7
blood vessel
7
vasculature
5
epithelium
5
pancreas
4
brain
2
artery
1
connective tissue
1
liver
1
musculature of body
1
vein
Project
5
AMP
Genome assembly (visualization)
5
GRCh38
5
hg19
Lab
5
AMP-T2D consortium
audit.WARNING.category!
inconsistent control read length
files.file_type!
fastq
BIOSAMPLE
ASSAY
5 results
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single cell RNA-seq
primary cell
pancreatic acinar cell
3
pancreatic ductal cell
1
pancreatic stellate cell
1
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