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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
907
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
180
Transcription
4
DNA accessibility
Date released
106
August, 2021
47
September, 2023
9
April, 2020
6
April, 2018
6
February, 2021
3
May, 2023
2
July, 2019
1
August, 2017
1
December, 2019
1
February, 2023
1
May, 2022
1
November, 2018
Available data
109
tsv
13
txt
10
bam
10
bigWig
8
fastq
6
csv
4
bed narrowPeak
4
bigBed narrowPeak
Organism
184
Homo sapiens
Biosample type
188
primary cell
184
tissue
2
in vitro differentiated cells
Organ
93
heart
65
kidney
9
lung
8
pancreas
6
blood vessel
6
vasculature
2
artery
1
brain
1
liver
1
musculature of body
Project
128
AMP
47
KPMP
9
LungMap
Genome assembly (visualization)
10
hg19
6
GRCh38
Lab
117
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
5
audit script error
organ_slims!
embryo
BIOSAMPLE
ASSAY
184 results
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single cell RNA-seq
FAIRE-seq
tissue
kidney
64
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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