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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1435
total RNA-seq
482
ATAC-seq
235
single cell RNA-seq
212
DNase-seq
87
RNA microarray
57
pCHi-C
36
snATAC-seq
31
Hi-C
28
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
41
DNA accessibility
18
Transcription
Date released
20
July, 2019
16
January, 2021
10
April, 2020
6
August, 2021
2
February, 2023
1
August, 2017
1
August, 2022
1
May, 2022
1
November, 2018
1
October, 2019
Available data
23
bam
23
bigWig
18
tsv
5
bed narrowPeak
5
bigBed narrowPeak
2
fastq
1
bed bed3+
1
tar
1
txt
Organism
58
Homo sapiens
Biosample type
48
tissue
11
primary cell
Organ
15
pancreas
10
lung
8
blood
8
bodily fluid
8
kidney
5
brain
3
adipose tissue
3
connective tissue
3
liver
3
musculature of body
1
blood vessel
1
epithelium
1
heart
1
vasculature
1
vein
Project
HPAP
31
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
24
hg19
18
GRCh38
Lab
25
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
2
audit script error
award.project!
HPAP
month_released!
April, 2018
BIOSAMPLE
ASSAY
59 results
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snATAC-seq
small RNA-seq
FAIRE-seq
tissue
lung
10
islet of Langerhans
7
1
kidney
6
1
pancreas
4
1
body of pancreas
2
+ See 13 more…
primary cell
peripheral blood mononuclear cell
8
endothelial cell of umbilical vein
1
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
See all biosamples
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