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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1783
ChIP-seq
1330
total RNA-seq
471
ATAC-seq
228
single cell RNA-seq
212
DNase-seq
87
RNA microarray
39
pCHi-C
30
Hi-C
28
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
8
snATAC-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
13
DNA accessibility
Date released
6
August, 2021
2
July, 2019
1
August, 2017
1
August, 2022
1
May, 2022
1
November, 2018
1
October, 2019
Available data
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
2
fastq
1
bed bed3+
1
tar
1
txt
Organism
13
Homo sapiens
Biosample type
12
tissue
1
primary cell
Organ
7
kidney
3
pancreas
1
blood vessel
1
brain
1
epithelium
1
musculature of body
1
vasculature
1
vein
Project
48
HPAP
18
T1D
13
AMP
10
LungMap
Genome assembly (visualization)
6
hg19
Lab
7
AMP-T2D consortium
6
Katalin Susztak, Upenn
Audit category:
2
audit script error
assay_title!
CRISPR RNA-seq
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
13 results
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snATAC-seq
FAIRE-seq
tissue
kidney
6
1
islet of Langerhans
1
1
frontal cortex
1
pancreas
1
skeletal muscle tissue
1
primary cell
endothelial cell of umbilical vein
1
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