Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1717
ChIP-seq
434
ATAC-seq
212
DNase-seq
101
total RNA-seq
85
RNA microarray
73
single cell RNA-seq
31
Hi-C
28
WGBS
21
RRBS
18
snATAC-seq
10
MeRIP-seq
9
pCHi-C
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
23
DNA accessibility
Date released
10
April, 2020
6
August, 2021
2
July, 2019
1
August, 2017
1
August, 2022
1
May, 2022
1
November, 2018
1
October, 2019
Available data
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
2
fastq
1
bed bed3+
1
tar
1
txt
Organism
22
Homo sapiens
Biosample type
22
tissue
1
primary cell
Organ
10
lung
7
kidney
3
pancreas
1
blood vessel
1
brain
1
epithelium
1
musculature of body
1
vasculature
1
vein
Project
HPAP
13
AMP
10
LungMap
Genome assembly (visualization)
6
hg19
Lab
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
7
AMP-T2D consortium
6
Katalin Susztak, Upenn
Audit category:
2
audit script error
award.project!
HPAP
files.file_type!
tsv
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
23 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
FAIRE-seq
tissue
lung
10
kidney
6
1
islet of Langerhans
1
1
frontal cortex
1
pancreas
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
1
See all biosamples
Download