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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
907
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1031
Transcription
4
DNA accessibility
Date released
444
February, 2021
143
May, 2020
120
July, 2018
90
August, 2017
50
August, 2021
39
May, 2021
33
July, 2019
26
May, 2022
25
February, 2020
22
October, 2019
19
November, 2019
13
February, 2023
9
March, 2020
1
May, 2023
1
November, 2018
Available data
925
tsv
905
bam
899
bigWig
99
fastq
59
txt
4
bed narrowPeak
4
bigBed narrowPeak
Organism
1035
Homo sapiens
Biosample type
1035
tissue
primary cell
136
in vitro differentiated cells
113
cell line
Organ
455
connective tissue
397
adipose tissue
285
pancreas
170
liver
62
bone element
51
kidney
19
eye
18
brain
15
heart
7
blood vessel
7
limb
7
vasculature
5
musculature of body
5
nerve
4
skeleton
2
artery
2
epithelium
1
spinal cord
Project
1028
AMP
7
T1D
Genome assembly (visualization)
900
hg19
896
GRCh38
Lab
953
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
audit.ERROR.category!
inconsistent replicate
biosample_type!
primary cell
BIOSAMPLE
ASSAY
1035 results
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total RNA-seq
FAIRE-seq
tissue
adipose tissue
382
islet of Langerhans
292
1
liver
167
bone tissue
58
kidney
49
1
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