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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1605
ChIP-seq
1124
total RNA-seq
378
ATAC-seq
288
single cell RNA-seq
171
DNase-seq
87
RNA microarray
72
snATAC-seq
54
pCHi-C
23
WGBS
19
Hi-C
14
RRBS
14
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
Date released
2
July, 2019
1
October, 2019
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
1
tar
Organism
3
Homo sapiens
Biosample type
2
tissue
1
primary cell
Organ
pancreas
1
blood vessel
1
brain
1
epithelium
1
kidney
1
vasculature
1
vein
Project
3
AMP
Genome assembly (visualization)
3
hg19
Lab
3
AMP-T2D consortium
audit.WARNING.category!
inconsistent control run_type
month_released!
August, 2018
organ_slims!
musculature of body
pancreas
BIOSAMPLE
ASSAY
3 results
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FAIRE-seq
tissue
frontal cortex
1
kidney
1
primary cell
endothelial cell of umbilical vein
1
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