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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
84
February, 2021
5
January, 2018
2
December, 2019
2
February, 2023
1
August, 2021
Available data
84
txt
5
bigWig
5
fastq
2
tsv
Organism
93
Homo sapiens
Biosample type
87
tissue
4
in vitro differentiated cells
2
cell line
1
stem cell
Organ
84
bone element
2
kidney
1
adipose tissue
1
connective tissue
1
embryo
1
epithelium
Project
92
AMP
2
T1D
Genome assembly (visualization)
5
hg18
Lab
92
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
2
audit script error
assay_title!
ChIP-seq
pCHi-C
BIOSAMPLE
ASSAY
94 results
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RNA microarray
GRO-seq
HiChIP
tissue
bone element
84
kidney interstitium
1
renal glomerulus
1
subcutaneous adipose tissue
1
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
cell line
EndoC_BH1
2
stem cell
hESC
1
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