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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
87
February, 2021
5
January, 2018
2
December, 2019
1
August, 2021
Available data
84
txt
5
bigWig
5
fastq
5
tsv
Organism
94
Homo sapiens
Biosample type
90
tissue
4
in vitro differentiated cells
1
stem cell
Organ
84
bone element
5
kidney
1
adipose tissue
1
connective tissue
1
embryo
1
epithelium
Project
95
AMP
Genome assembly (visualization)
5
hg18
Lab
95
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
2
audit script error
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
95 results
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RNA microarray
GRO-seq
snDrop-seq
tissue
bone element
84
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
+ See 2 more…
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
1
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