Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1673
ChIP-seq
1391
total RNA-seq
489
ATAC-seq
367
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA methylation
Date released
41
May, 2022
12
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
1
January, 2018
Available data
41
zippedFastqFolder
18
bam
18
bigWig
18
fastq
17
bed bedMethyl
17
bigBed bedMethyl
6
tsv
Organism
76
Homo sapiens
Biosample type
47
primary cell
27
tissue
in vitro differentiated cells
1
cell line
1
stem cell
Organ
51
pancreas
47
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
29
AMP
Genome assembly (visualization)
17
GRCh38
1
hg18
Lab
47
Klaus Kaestner, Upenn
29
AMP-T2D consortium
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
76 results
search-icon
table-tab-icon
Clear Filters
WGBS
GRO-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 8 more…
cell line
HepG2
1
stem cell
hESC
1
See all biosamples
Download