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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1338
total RNA-seq
1312
ChIP-seq
508
ATAC-seq
368
single cell RNA-seq
206
DNase-seq
86
RNA microarray
83
snATAC-seq
70
WGBS
54
pCHi-C
30
Hi-C
19
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
DNAme array
Assay category
70
DNA methylation
Date released
41
May, 2022
11
July, 2019
6
August, 2017
6
February, 2021
6
November, 2018
5
January, 2018
Available data
41
zippedFastqFolder
21
bigWig
20
fastq
17
bam
16
bed bedMethyl
16
bigBed bedMethyl
6
tsv
Organism
75
Homo sapiens
Biosample type
47
primary cell
23
tissue
4
in vitro differentiated cells
1
stem cell
Organ
51
pancreas
47
epithelium
8
heart
6
adipose tissue
6
connective tissue
liver
2
blood vessel
2
spleen
2
vasculature
1
embryo
1
limb
1
musculature of body
Project
47
HPAP
28
AMP
Genome assembly (visualization)
16
GRCh38
5
hg18
Lab
47
Klaus Kaestner, Upenn
28
AMP-T2D consortium
organ_slims!
liver
BIOSAMPLE
ASSAY
75 results
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WGBS
GRO-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
subcutaneous abdominal adipose tissue
3
aorta
2
body of pancreas
2
+ See 6 more…
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
1
See all biosamples
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