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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1673
ChIP-seq
1391
total RNA-seq
489
ATAC-seq
359
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
Transcription
Date released
18
July, 2019
1
January, 2018
Available data
19
bigWig
18
bam
18
tsv
1
fastq
Organism
19
Homo sapiens
Biosample type
16
tissue
in vitro differentiated cells
2
primary cell
1
stem cell
Organ
4
brain
3
adipose tissue
3
connective tissue
3
liver
2
musculature of body
2
pancreas
1
heart
1
kidney
Project
19
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
1
hg18
Lab
19
AMP-T2D consortium
biosample_type!
in vitro differentiated cells
files.file_type!
csv
BIOSAMPLE
ASSAY
19 results
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small RNA-seq
GRO-seq
tissue
body of pancreas
2
right lobe of liver
2
cerebellum (Hemisphere)
1
diencephalon
1
frontal cortex
1
+ See 9 more…
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
stem cell
hESC
1
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