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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1805
ChIP-seq
1526
total RNA-seq
525
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
76
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
76
DNA accessibility
Date released
27
February, 2021
22
May, 2022
10
April, 2020
8
January, 2021
6
August, 2021
5
January, 2018
2
February, 2023
1
August, 2022
Available data
32
fastq
21
zippedFastqFolder
5
bigWig
1
bed bed3+
1
txt
Organism
80
Homo sapiens
Biosample type
48
primary cell
28
tissue
4
in vitro differentiated cells
1
stem cell
Organ
11
pancreas
10
lung
8
blood
bodily fluid
6
kidney
1
embryo
1
musculature of body
Project
48
HPAP
13
AMP
10
LungMap
10
T1D
Genome assembly (visualization)
5
hg18
1
hg19
Lab
48
Klaus Kaestner, Upenn
10
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
7
AMP-T2D consortium
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
month_released!
September, 2017
organ_slims!
bodily fluid
spinal cord
BIOSAMPLE
ASSAY
81 results
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snATAC-seq
GRO-seq
primary cell
Langerhans cell
48
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
skeletal muscle tissue
1
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
1
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