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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1167
total RNA-seq
1105
ChIP-seq
302
ATAC-seq
182
single cell RNA-seq
179
DNase-seq
87
RNA microarray
30
pCHi-C
28
snATAC-seq
27
WGBS
20
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
Assay category
1167
Transcription
Date released
466
February, 2021
143
May, 2020
123
May, 2021
120
July, 2018
89
August, 2017
57
August, 2021
31
July, 2019
26
May, 2022
25
February, 2020
24
October, 2019
19
November, 2019
17
February, 2023
15
February, 2018
11
March, 2020
4
January, 2018
1
May, 2023
Available data
1052
tsv
1028
bam
1026
bigWig
116
fastq
59
txt
Organism
1171
Homo sapiens
Biosample type
1031
tissue
247
primary cell
140
in vitro differentiated cells
113
cell line
1
stem cell
Organ
464
connective tissue
397
adipose tissue
283
pancreas
170
liver
62
bone element
50
kidney
19
eye
17
brain
16
heart
7
blood vessel
7
embryo
7
limb
7
vasculature
5
musculature of body
5
nerve
4
epithelium
4
skeleton
2
artery
1
spinal cord
Project
1164
AMP
7
T1D
Genome assembly (visualization)
1023
GRCh38
1023
hg19
4
hg18
Lab
1084
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
17
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
90
inconsistent ontology term
BIOSAMPLE
ASSAY
1171 results
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total RNA-seq
GRO-seq
tissue
adipose tissue
382
islet of Langerhans
292
liver
167
bone tissue
58
kidney
49
+ See 47 more…
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
induced pluripotent stem cell
9
embryonic stem cell
7
neural progenitor cell
7
+ See 22 more…
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