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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1280
total RNA-seq
848
ChIP-seq
326
ATAC-seq
182
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
28
snATAC-seq
24
Hi-C
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNase-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1
DNA sequencing
Date released
5
January, 2018
1
August, 2021
Available data
5
bigWig
5
fastq
1
vcf
Organism
6
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
cell line
1
stem cell
Organ
1
embryo
1
liver
Project
6
AMP
Genome assembly (visualization)
5
hg18
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
assay_title!
small RNA-seq
biosample_type!
primary cell
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
6 results
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GRO-seq
whole genome sequencing assay
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
cell line
HepG2
1
stem cell
hESC
1
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