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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1809
ChIP-seq
1397
total RNA-seq
489
ATAC-seq
360
single cell RNA-seq
208
DNase-seq
84
snATAC-seq
75
WGBS
47
pCHi-C
28
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
28
3D chromatin structure
Date released
8
July, 2019
8
March, 2020
3
August, 2021
3
October, 2022
2
October, 2019
1
December, 2018
1
March, 2019
1
March, 2023
1
November, 2019
Available data
18
hic
15
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
3
cool
1
bedpe
1
fastq
Organism
28
Homo sapiens
Biosample type
16
tissue
10
primary cell
2
cell line
Organ
7
epithelium
7
pancreas
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
24
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
21
hg19
1
GRCh38
Lab
20
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
4
audit script error
Audit category:
inconsistent assembly
assay_title!
Capture-C
audit.ERROR.category!
inconsistent ontology term
audit.WARNING.category!
inconsistent assembly
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
28 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
+ See 4 more…
cell line
HepG2
2
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